环境要求

CPU

鲲鹏920处理器

GATK

4.0.0.0

https://github.com/broadinstitute/gatk/releases/download/4.0.0.0/gatk-4.0.0.0.zip

Samtools

0.1.9

https://master.dl.sourceforge.net/project/samtools/samtools/0.1.9/samtools-0.1.9.tar.bz2

BLAT

35.1

https://codeload.github.com/djhshih/blat/tar.gz/v35.1

BWA

0.7.17

https://sourceforge.net/projects/bio-bwa/files/bwa-0.7.17.tar.bz2/download

Hadoop

3.1.2

https://archive.apache.org/dist/hadoop/common/hadoop-3.1.2/hadoop-3.1.2.tar.gz

Spark

2.4.4

https://archive.apache.org/dist/spark/

测试算例1

SRR742200_1.fastq

http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR742/SRR742200/SRR742200_1.fastq.gz

测试算例2

SRR742200_2.fastq

http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR742/SRR742200/SRR742200_2.fastq.gz

测试算例3

human_g1k_v37.fasta

http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/human_g1k_v37.fasta.gz

测试算例4

dbsnp132_20101103.vcf

http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/dbsnp132_20101103.vcf.gz

CentOS

7.6

https://www.centos.org/download/

Kernel

4.14.0-115

包含在操作系统镜像中。