运行和验证

操作步骤

1. 使用PuTTY工具，以root用户登录服务器。
2. 执行以下命令进入工作目录。

   cd /path/to/MINIMAP2/minimap2-master

3. 执行以下命令运行小算例验证。

   ./minimap2 -a test/MT-human.fa test/MT-orang.fa > test.sam

   回显显示如下信息，表示运行成功。

   [M::mm_idx_gen::0.002*2.34] collected minimizers
   [M::mm_idx_gen::0.006*2.70] sorted minimizers
   [M::main::0.006*2.69] loaded/built the index for 1 target sequence(s)
   [M::mm_mapopt_update::0.007*2.51] mid_occ = 2
   [M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1
   [M::mm_idx_stat::0.007*2.40] distinct minimizers: 3111 (100.00% are singletons); average occurrences: 1.000; average spacing: 5.326; total length: 16569
   [M::worker_pipeline::0.032*1.32] mapped 1 sequences
   [M::main] Version: 2.17-r974-dirty
   [M::main] CMD: ./minimap2 -a test/MT-human.fa test/MT-orang.fa
   [M::main] Real time: 0.035 sec; CPU: 0.045 sec; Peak RSS: 0.005 GB