CMake
|
3.17.3
|
https://cmake.org/files/v3.17/cmake-3.17.3.tar.gz
|
Boost
|
1.66.0
|
https://boostorg.jfrog.io/artifactory/main/release/1.66.0/source/boost_1_66_0.tar.gz
|
salmon
|
1.4.0
|
https://github.com/COMBINE-lab/salmon/archive/v1.4.0.tar.gz
|
Jellyfish
|
2.2.10
|
https://github.com/gmarcais/Jellyfish/releases/download/v2.2.10/jellyfish-2.2.10.tar.gz
|
htslib
|
1.11
|
https://github.com/samtools/htslib/archive/1.11.tar.gz
|
Samtools
|
1.11
|
https://github.com/samtools/samtools/archive/1.11.tar.gz
|
Bowtie2
|
2.3.5.1
|
https://netix.dl.sourceforge.net/project/bowtie-bio/bowtie2/2.3.5.1/bowtie2-2.3.5.1-source.zip
|
sse2neno
|
master
|
https://github.com/jratcliff63367/sse2neon/archive/master.zip
|
SIMDe
|
v0.7.0-rc-1
|
https://github.com/simd-everywhere/simde/archive/v0.7.0-rc-1.tar.gz
|
Python
|
3.8
|
https://www.python.org/ftp/python/3.8.0/Python-3.8.0.tgz
|
Cython
|
0.29.21
|
https://files.pythonhosted.org/packages/6c/9f/f501ba9d178aeb1f5bf7da1ad5619b207c90ac235d9859961c11829d0160/Cython-0.29.21.tar.gz
|
numpy
|
1.19.4
|
https://files.pythonhosted.org/packages/c5/63/a48648ebc57711348420670bb074998f79828291f68aebfff1642be212ec/numpy-1.19.4.zip
|
Trinity
|
2.11.0
|
https://github.com/trinityrnaseq/trinityrnaseq/archive/v2.11.0.tar.gz
|
Inchworm
|
master
|
https://github.com/trinityrnaseq/Inchworm/archive/master.zip
|
Chrysalis
|
master
|
https://github.com/trinityrnaseq/Chrysalis/archive/8ef13ed1fa618186ec3dc04522115c99fdfacda2.zip
|
seqtk-trinity
|
master
|
https://github.com/trinityrnaseq/seqtk-trinity/archive/f5e229dc164823c3ef14e8b8e2ba7d84c8d80e6c.zip
|
bamsifter
|
master
|
https://github.com/trinityrnaseq/bamsifter/archive/f034f247d5fa1fd9847c390d99bfd918da7d7739.zip
|
算例1
|
SRR3050898_1.fastq
|
http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/008/SRR3050898/SRR3050898_1.fastq.gz
|
算例2
|
SRR3050898_2.fastq
|
http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR305/008/SRR3050898/SRR3050898_2.fastq.gz
|