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Paths for Software Porting

This chapter lists the software installation paths involved in the AlphaFold software porting.

Table 1 Paths for software porting

No.

Software Installation Path

Description

Remarks

1

-

Installation path of each software package for setting up the basic environment

See "Planning the Installation Paths" in HPC Solution Basic Environment Setup Guide.

2

/path/to/python

Installation path of Python

The installation paths provided here are only examples. Shared paths are recommended. Replace the paths used in commands in this document with the actual paths planned during the installation process.

4

/path/to/NVIDIA-CUDA

Installation path of NVIDIA CUDA.

5

/path/to/tensorflow

Installation path of TensorFlow

6

/path/to/bazel

Installation path of Bazel

7

/path/to/jaxlib

Installation path of jaxlib

8

/path/to/AlphaFold

Installation path of AlphaFold

9

/path/to/CASE

Path for AlphaFold test cases

10

/usr/local/cuda-11.4

Installation path of CUDA