Installing Samtools

Use PuTTY to log in to the server as the root user.
Run the following command to decompress the Samtools installation package:
```
tar -xvf samtools-1.10.tar.bz2
```
Run the following command to switch to the directory generated after the package is decompressed:
```
cd samtools-1.10
```
Run the following command to perform installation:
```
yum install -y bzip2-devel bzip2-libs bzip2
```
Run the following command to perform configuration:
```
./configure --prefix=/path/to/SAMTOOLS
```
Run the following commands to perform compilation and installation:
```
make all all-htslib
make install install-htslib
```

Run the following commands to set the Samtools environment variables:

export PATH=/path/to/SAMTOOLS/bin:$PATH
export LD_LIBRARY_PATH=/path/to/SAMTOOLS/lib:$LD_LIBRARY_PATH

Parent topic: Configuring the Compilation Environment