Installing HTSlib

Procedure

1. Use PuTTY to log in to the server as the root user.
2. Use the SFTP tool to upload the HTSlib installation package to the /path/to/AUGUSTUS directory.
3. Run the following command to install dependencies:

   yum install -y libcurl libcurl-devel openssl openssl-devel zlib-devel bzip2 bzip2-devel xz-devel boost-devel

4. Run the following command to decompress the package:

   cd /path/to/AUGUSTUS && tar -zxf htslib-1.11.tar.gz

5. Run the following command to rename and go to the installation directory:

   mv htslib-1.11 htslib && cd htslib

6. Run the following commands to perform configuration:

   autoheader

   autoconf

   sed -i 's/\-O2/\-O3 -march=armv8.2-a -mtune=tsv110/g' `grep -lr "\-O2" ./`

   CC=`which gcc` ./configure --prefix=/path/to/AUGUSTUS/htslib

7. Run the following commands to perform compilation and installation:

   make -j 16

   make install