Compiling and Installing AUGUSTUS

Procedure

1. Run the following command to go to the installation directory and decompress the software package:

   cd /path/to/AUGUSTUS && tar -zxf Augustus-3.3.3.tar.gz && cd Augustus-3.3.3

2. Run the following commands to perform configuration:

   export TOOLDIR=/path/to/AUGUSTUS

   export LD_LIBRARY_PATH=/path/to/AUGUSTUS/bamtools/lib64:$LD_LIBRARY_PATH

   export LIBRARY_PATH=/path/to/AUGUSTUS/bamtools/lib64:$LIBRARY_PATH

   sed -i 's/\/usr\/include\/bamtools/\/path\/to\/AUGUSTUS\/bamtools\/include\/bamtools/g' `grep -rl "/usr/include/bamtools" ./`

3. Run the following command to set the installation path:

   sed -i 's/\/opt\/augustus/\/path\/to\/AUGUSTUS\/augustus_aarch64/g' Makefile

4. Run the following commands to perform compilation and installation:

   CC=`which gcc` CXX=`which g++` CXXFLAGS='-O3 -std=c++11 -march=armv8.2-a -mtune=tsv110' CFLAGS='-O3 -march=armv8.2-a -mtune=tsv110' make -j

   make install