Obtaining Source Code

Procedure

1. Download the Blastz installation package blastz-2004-12-27.deprecated.tar.gz from the following link:

   http://www.bx.psu.edu/miller_lab/dist/blastz-2004-12-27.deprecated.tar.gz

2. Run the following commands to download the hg38.chr4.fa and galGal3.chr4.fa test cases:

   wget http://hgdownload.soe.ucsc.edu/goldenPath/hg38/chromosomes/chr4.fa.gz -O hg38.chr4.fa.gz

   wget http://hgdownload.soe.ucsc.edu/goldenPath/galGal3/chromosomes/chr4.fa.gz -O galGal3. chr4.fa.gz

3. Use an SFTP tool to upload the downloaded source code package to the /path/to/BLASTZ directory on the server.
4. Use an SFTP tool to upload the test cases to the /path/to/CASE directory on the server.