Running and Verifying Blastz

Procedure

1. Use PuTTY to log in to the server as the root user.
2. Run the following command to go to the CASE directory:

   cd /path/to/CASE

3. Run the following commands to decompress the test case packages:

   gzip -d hg38.chr4.fa.gz

   gzip -d galGal3.chr4.fa.gz

4. Run the following command to run the test cases:

   time blastz hg38.chr4.fa galGal3.chr4.fa C=3 T=2 Z=10 > hg38_c4-vs-galGal3_c4-kp7265.out

   View the hg38_c4-vs-galGal3_c4-kp7265.out information.

   Figure 1 shows an example of the result.

   Figure 1 An example result