Paths for Software Porting

This chapter lists the software installation paths involved in the Bowtie software porting.

**Table 1** Paths for software porting
No.	Software Installation Path	Description	Remarks
1	-	Installation path of each software package required for setting up the basic environment	See "Paths for Software Porting" in Basic Environment Setup Guide.
2	/path/to/BOWTIE	Installation path of Bowtie	The installation paths listed in this table are only examples. Shared paths are recommended. Replace the paths used in commands in this document with the actual paths planned during the installation process.
3	/path/to/SIMDE	Installation path of SIMDE
4	/path/to/SSE2NENO	Installation path of sse2neno
5	/path/to/CHROMFA	Installation path of chromFa

Parent topic: Bowtie 1.2.3 Porting Guide (CentOS 7.6)