Compilation and Installation

Procedure

Use PuTTY to log in to the server as the root user.

Decompress the installation package.

tar xvf cistem-1.0.0-beta-source-code.tar.gz

Go to the directory generated after the decompression.
```
cd cistem-1.0.0-beta
```
Modify the source code.
1. Open the source code file.
```
vi src/core/matrix.cpp
```
2. Press i to enter the insert mode and modify the file as follows:
  Change line 7
```
#define _AL_SINCOS(x, s, c)  __asm__ ("fsincos" : "=t" (c), "=u" (s) : "0" (x))
```
  to:
```
#define _AL_SINCOS(x, s, c)   s = sinf(x);  c = cosf(x);
```
3. Press Esc, type :wq!, and press Enter to save the file and exit.

Modify the source code.

Open the source code file.
```
vi src/gui/AssetPickerComboPanel.h
```

Press i to enter the insert mode and modify the file as follows:

Change line 49

bool FillComboBox(long wanted_refinement_package, bool always_select_latest = false) {AssetComboBox->FillWithRefinements(wanted_refinement_package, always_select_latest);}

to:

bool FillComboBox(long wanted_refinement_package, bool always_select_latest = false) {return AssetComboBox->FillWithRefinements(wanted_refinement_package, always_select_latest);}

Change line 65

bool FillComboBox(bool include_all_images_group) {AssetComboBox->FillWithImageGroups(include_all_images_group);}

to:

bool FillComboBox(bool include_all_images_group) {return AssetComboBox->FillWithImageGroups(include_all_images_group);}

Change line 73

bool FillComboBox(bool include_all_movies_group) {AssetComboBox->FillWithMovieGroups(include_all_movies_group);}

to:

bool FillComboBox(bool include_all_movies_group) {return AssetComboBox->FillWithMovieGroups(include_all_movies_group);}

Press Esc, type :wq!, and press Enter to save the file and exit.

Modify the source code.
1. Open the source code file.
```
vi src/programs/projectx/projectx.cpp
```
2. Press i to enter the insert mode and add the following content:
  Change line 297
```
return true;
```
3. Press Esc, type :wq!, and press Enter to save the file and exit.
Modify the source code.
```
sed -i 's/\-03/\-00/' configure
```

Perform the compilation and installation.

yum install libtiff xorg-x11-*
./configure --prefix=/path/to/CISTEM --with-fftw-dir=/path/to/FFTW
make -j
make install

Parent topic: cisTEM 1.0 Porting Guide (CentOS 7.6)