Paths for Software Porting

This chapter lists the software installation paths involved in the Cufflinks software porting.

**Table 1** Paths for software porting
No.	Software Installation Path	Description	Remarks
1	-	Installation path of each software package required for setting up the basic environment	See "Paths for Software Porting" in Basic Environment Setup Guide.
2	/path/to/BOOST	Installation path of Boost	The installation paths listed in this table are only examples. Shared paths are recommended. Replace the paths used in commands in this document with the actual paths planned during the installation process.
3	/path/to/SAMTOOL	Installation path of SAMtools
4	/path/to/HTSLIB	Installation path of HTSlib
5	/path/to/EIGEN	Installation path of Eigen
6	/path/to/CUFFLINKS	Installation path of Cufflinks

Parent topic: Cufflinks 2.2.1 Porting Guide (CentOS 7.6)