Troubleshooting

An Error Is Reported When GATK Is Run

Symptom:

An error message similar to the following is displayed when running GATK: "Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression8107837509941713683.so: /tmp/libgkl_compression8107837509941713683.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64-bit .so on an AARCH64-bit platform))".

Possible Cause

GKL is an acceleration library developed based on the Intel CPU, and needs to be ported to the Kunpeng platform.

Procedure

Ignore this error if performance comparison is not involved.