Compilation and Installation

Procedure

1. Use PuTTY to log in to the server as the root user.
2. Run the following command to install dependencies:

   yum install blas-devel.aarch64 lapack-devel.aarch64 -y

3. Run the following command to decompress the installation package:

   tar -xvf GEMMA-0.98.1.tar.gz

4. Run the following command to go to the directory generated after decompression:

   cd GEMMA-0.98.1

5. Run the following command to perform compilation and installation:

   make EIGEN_INCLUDE_PATH=/path/to/EIGEN /include/eigen3 WITH_OPENBLAS=1 GCC_FLAGS="-Wall" LIBS="/path/to/GSL /lib/libgsl.a /path/to/GSL /lib/libgslcblas.a -L/path/to/OPENBLAS /lib -pthread -lopenblas -llapack -lblas -lz" OPENBLAS_INCLUDE_PATH=/path/to/OPENBLAS /include -j 16

6. Run the following command to set environment variables:

   export PATH=/path/to/GEMMA/GEMMA-0.98.1/bin:$PATH