Running and Verification

Procedure

1. Run the following command to go to the test case directory:

   cd /path/to/TESTCASE

2. Run the following commands to decompress the test case file packages:

   gzip -d Drosophila_melanogaster.BDGP6.dna.toplevel.fa.gz

   gzip -d R1.fq.gz

   gzip -d R2.fq.gz

3. Run the following command to rename the fa file:

   mv Drosophila_melanogaster.BDGP6.dna.toplevel.fa genome.fa

4. Run the following command to create a genome index:

   hisat-build genome.fa genome

5. Run the following command to compare gene sequences:

   hisat -t -x genome -p 96 -1 R1.fq -2 R2.fq -S result.sam

   If the following information is displayed, the verification is successful: