Running and Verification

Procedure

1. Use PuTTY to log in to the server as the root user.
2. Go to the main program installation directory.

   cd /path/to/homer

3. Download the test file.

   wget https://phoenixnap.dl.sourceforge.net/project/rseqc/BED/Human_Homo_sapiens/hg19_RefSeq.bed.gz

4. Decompress the test file.

   gzip -d hg19_RefSeq.bed.gz

5. Perform the test.

   findMotifsGenome.pl hg19_RefSeq.bed hg19 H3K4Me3_motif -len 8,10,12

   The test takes approximately 100 minutes.

   

   The test result is stored in this directory: