Introduction

This software implements MSMC, a method to infer population size and gene flow from multiple genome sequences.

In short, MSMC can infer:

• the scaled population size of a single population as a function of time
• the timing and nature of population separations between two populations

from multiple phased haplotypes. When only two haplotypes are given, MSMC is similar to PSMC, and we call it PSMC' because of subtle differences in the method and the underlying model, which allows PSMC' to infer more accurately the recombination rate.

For more information, visit the MSMC page at GitHub.

Programming language: D

Brief description: A method to infer population size and gene flow from multiple genome sequences.

Open source license: GPL 3.0