Introduction

IDBA_UD is the basic iterative de Bruijn graph assembler for second-generation sequencing reads. IDBA-UD, an extension of IDBA, is designed to utilize paired-end reads to assemble low-depth regions and use progressive depth on contigs to reduce errors in high-depth regions. It is a generic purpose assembler and especially good for single-cell and metagenomic sequencing data.

For more information, visit the IDBA_UD page at GitHub.

Programming language: C++

Brief description: Basic iterative de Bruijn graph assembler for second-generation sequencing reads.

Open source license: unknown

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