Running and Verifying Jellyfish

Procedure

1. Run the following command to go to the directory where the test case is stored:

   cd /path/to/TESTCASE

2. Run the following command to decompress the test case file:

   gzip -d human_g1k_v37.fasta.gz

3. Run the following command to count k-mers:

   jellyfish count -m 21 -s 100M -t 96 -o mer_counts -c 7 human_g1k_v37.fasta

   If the mer_counts file is generated, the verification is successful.