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Installing KmerGenie

Procedure

  1. Run the following command to decompress the installation package:
    tar zxvf kmergenie-1.7051.tar.gz
  2. Run the following command to go to the directory generated after the decompression:
    cd kmergenie-1.7051
  3. Run the following command to add compilation parameters:
    1. Open Makefile.
      vi makefile
    2. Press i to enter the insert mode and modify line 8 in the makefile file as follows:

      Before the modification:

      CXXFLAGS ?=-O4

      After the modification:

      CXXFLAGS ?=-O3 -std=c++11 -march=armv8.2-a -mtune=tsv110
    3. Press Esc, type :wq!, and press Enter to save the file and exit.
  4. Run the following commands to perform the compilation:
    make
  5. Run the following command to set the environment variable:
    export PATH=/path/to/KMERGENIE/kmergenie-1.7051:$PATH