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Running and Verifying KmerGenie

Procedure

  1. Run the following command to check the KmerGenie version:
    kmergenie

    The following version information is displayed:

  2. Run the following command to go to the directory where the test case is stored:
    cd /path/to/TESTCASE
  3. Run the following command to decompress the test case file:
    gzip -d human_g1k_v37.fasta.gz
  4. Run the following command to run the test case:
    kmergenie -k 200 -t 96 human_g1k_v37.fasta

    If the following information is displayed and multiple .pdf files are generated, the verification is successful: