Running and Verifying KmerGenie
Procedure
- Run the following command to check the KmerGenie version:
kmergenie
The following version information is displayed:

- Run the following command to go to the directory where the test case is stored:
cd /path/to/TESTCASE
- Run the following command to decompress the test case file:
gzip -d human_g1k_v37.fasta.gz
- Run the following command to run the test case:
kmergenie -k 200 -t 96 human_g1k_v37.fasta
If the following information is displayed and multiple .pdf files are generated, the verification is successful:

Parent topic: kmergenie 1.7051 Porting Guide (CentOS 7.6)