Introduction

KneadData is a tool designed to perform quality control on metagenomic sequencing data, especially data from microbiome experiments. KneadData invokes Trimmomatic for its quality filtering/trimming, as well as Tandem Repeat Finder (TRF) and FastQC, and Bowtie2 to align your reads to your list of contaminant reference sequences.

For more information about KneadData, visit the KneadData official website.

Programming language: Python

Brief description: KneadData is a tool designed to perform quality control on metagenomic sequencing data.

Open source license: MIT