Running and Verifying MAFFT

Procedure

Run the following command to go to the test directory:
```
cd /path/to/CASE
```
Run the following command to add the environment variable:
```
export PATH=/path/to/MAFFT/bin:$PATH
```

Run the following command to check whether the software is correctly installed:

{ time MAFFT_N_THREADS_PER_PROCESS="1" MAFFT_MPIRUN="mpirun --allow-run-as-root -n 128" MAFFT_TMPDIR="/path/to/CASE" mafft --mpi --large --globalpair ex1.txt > kp_out; } 2>&1 | tee -a  `hostname`_`date '+%Y%m%d%H%M%S'`.log

The following figure shows the execution result:

Parent topic: MAFFT Porting Guide (CentOS 7.6)