Running and Verification

Procedure

1. Use PuTTY to log in to the server as the root user.
2. Import mCaller.

   python3
   import mCaller

   If no error is displayed in the command output, the import is successful.

   

3. Run mCaller. (The following is an example.)

   cd /path/to/mCaller
   python3 mCaller.py -p testdata/test_positions.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -t 4 --train -f testdata/masonread1.fastq

   

   python3 make_bed.py -f testdata/masonread1.eventalign.diffs.6 -d 1 -t 0.5