Installing HDF5

Procedure

1. Use PuTTY to log in to the server as the root user.
2. Download the HDF5 installation package.

   cd /path/to/hdf5
   wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1.tar.gz

3. Decompress the HDF5 installation package.

   tar xvf hdf5-1.10.1.tar.gz

4. Go to the directory generated after the decompression.

   cd hdf5-1.10.1

5. Compile and install HDF5.

   export CC=mpicc CXX=mpicxx FC=mpifort
   ./configure --prefix=/path/to/hdf5 --build=aarch64-unknown-linux-gnu --build=aarch64-unknown-linux-gnu --enable-fortran --enable-static=yes --enable-parallel --enable-shared CFLAGS="-O3 -fPIC -Wno-incompatible-pointer-types-discards-qualifiers -Wno-non-literal-null-conversion" FCFLAGS="-O3 -fPIC" LDFLAGS="-Wl,--build-id"
   sed -i '11835c wl="-Wl,"' libtool
   make -j
   make install