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Running and Verification

Procedure

  1. Use PuTTY to log in to the server as the root user.
  2. Run the following command to go to the test case directory:
    cd /path/to/TESTCASE
  3. Run the following commands to create an input file named inp for calculating the ground state of the hydrogen atom:
    1. Open the inp file.
      vi inp
    2. Press i to go to the insert mode and add the following content:
      CalculationMode = gs
      %Coordinates
      'H'|0|0|0
      %
    3. Press Esc, type :wq!, and press Enter to save the file and exit.
  4. Run the following command to execute the test case file:
    mpirun --allow-run-as-root -mca pml ucx -mca btl ^vader,tcp,openib,uct -x UCX_TLS=self,sm --bind-to core --map-by socket --rank-by core -np 128 -x UCX_BUILTIN_ALLREDUCE_ALGORITHM=8 octopus
  5. Run the following command to check the calculation result:
    cat static/info