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Compiling and Installing Ont-Tombo

  1. Use PuTTY to log in to the server as the root user.
  2. Run the following command to install Numpy:
    pip install -i https://pypi.tuna.tsinghua.edu.cn/simple numpy
  3. Run the following command to install Scipy:
    LAPACK=/path/to/OPENBLAS/lib/libopenblas.so BLAS=/path/to/OPENBLAS/lib/libopenblas.so pip install -i https://pypi.tuna.tsinghua.edu.cn/simple scipy
  4. Run the following command to install Ont-Tombo:
    CFLAGS="-I/path/to/HDF5/include -L/path/to/HDF5/lib" pip install -i https://pypi.tuna.tsinghua.edu.cn/simple ont-tombo
    If information similar to the following is displayed, the installation is successful:
    Successfully installed cython-0.29.15 future-0.18.2 h5py-2.10.0 mappy-2.17 ont-tombo-1.5.1 tqdm-4.43.0