Running and Verifying PAML

Procedure

1. Use PuTTY to log in to the server as the root user.
2. Run the following command to switch to the installation directory of the executable file:

   cd /path/to/PAML/paml4.9j

3. Run the following commands to run the test case:

   cp src/codeml /path/to/PAML/paml4.9j/examples/HIVNSsites

   cd /path/to/PAML/paml4.9j/examples/HIVNSsites

   ./codeml

   After the command is run, the following information is displayed: