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Paths for Software Porting

This chapter lists software installation paths involved in the PanPhlAn software porting.

Table 1 Paths for software porting

No.

Software Installation Path

Description

Remarks

1

-

Installation path of each software package required for setting up the basic environment.

See "Paths for Software Porting" in Basic Environment Setup Guide.

2

/path/to/python3.7.9

Installation path of Python.

The installation paths provided here are only an example. Shared paths are recommended. All the paths used in commands in this document need to be replaced with the actual paths planned during the installation process.

3

/path/to/Bowtie2 2.41

Installation path of Bowtie2.

4

/path/to/samtools1.11

Installation path of Samtools.

5

/path/to/panphlan

Installation path of PanPhlAn.