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Configuring the Compilation Environment

Prerequisites

The installation packages have been uploaded to the server using an SFTP tool.

Configure Process

Table 1 Configure process

No.

Configuration Item

Remarks

1

Setting up the basic environment

See "Setting Up the Environment for the Cluster Scenario" in Basic Environment Setup Guide.

4

Installing Bowtie2

See Bowtie2 2.4.1 Porting Guide (CentOS 7.6).

5

Installing Samtools

See CNVnator 0.4.1 Porting Guide (CentOS 7.6).

The configure: error: liblzma development files not found error may be reported during Samtools installation. Run the following command to rectify the error:

yum -y install xz-devel