Paths for Software Porting

This chapter lists the software installation paths involved in the PASA software porting.

**Table 1** Paths for software porting
No.	Software Installation Path	Description	Remarks
1	-	Installation path of each software package required for setting up the basic environment.	See "Paths for Software Porting" in Basic Environment Setup Guide.
2	/path/to/BLAT	Installation path of Blat.	The installation paths provided here are only examples. Shared paths are recommended. Replace the paths used in commands in this document with the actual paths planned during the installation process.
3	/path/to/URI	Installation path of URI.
4	/path/to/PASA	Installation path of PASA.
5	/path/to/SAMTOOLS	Installation path of Samtools.
6	/path/to/GMAP	Installation path of GMAP.	See GMAP 2015.9.21 Porting Guide (CentOS 7.6).

Parent topic: PASA 2.4.1 Porting Guide (CentOS 7.6)