Introduction

PhyloPhlAn is an integrated pipeline for large-scale phylogenetic profiling of genomes and metagenomes. PhyloPhlAn is an accurate, rapid, and easy-to-use method for large-scale microbial genome characterization and phylogenetic analysis at multiple levels of resolution. PhyloPhlAn can assign both genomes and metagenome-assembled genomes (MAGs) to species-level genome bins (SGBs). PhyloPhlAn can reconstruct strain-level phylogenies using clade-specific maximally informative phylogenetic markers, and can also scale to very-large phylogenies comprising >17,000 microbial species.

For more information about PhyloPhlAn, visit the PhyloPhlAn official website.

Programming languages: Python, Perl

Brief description: PhyloPhlAn is an integrated pipeline for large-scale phylogenetic profiling of genomes and metagenomes.

Open source license: MIT License