Paths for Software Porting

This chapter lists the software installation paths involved in the Picard software porting.

**Table 1** Paths for software porting
No.	Software Installation Path	Description	Remarks
1	-	Installation path of each software package required for setting up the basic environment.	See "Paths for Software Porting" in Basic Environment Setup Guide.
2	/path/to/PICARD	Installation path of Picard.	The installation paths listed in this table are only examples. Shared paths are recommended. Replace the paths used in commands in this document with the actual paths planned during the installation process.
3	/path/to/SAMTOOLS	Installation path of Samtools.
4	/path/to/TESTCASE	Installation path of test cases.
5	/path/to/BWA	Installation path of BWA.	See BWA 0.7.17 Porting Guide (CentOS 7.6).

Parent topic: Picard 2.23.3 Porting Guide (CentOS 7.6)