Running and Verification

Procedure

1. Use PuTTY to log in to the server as the root user.
2. Set the environment variable.

   export PATH=/path/to/PLATANUS/Platanus_v1.2.4:$PATH

3. Upload the downloaded test file to the /path/to/PLATANUS/CASE directory and decompress it.
4. Run the test case.

   cd /path/to/PLATANUS/CASE/Platanus_allee_test_data_180619/test_run
   platanus assemble -t 64 -tmp ./ -m 8 -o out -f ../reads/Illumina_PE500/R*.fq 2>&1 |tee out.assemble.log

   Figure 1 shows an example of the running result.

   Figure 1 An example result