Compilation and Installation
Procedure
- Use PuTTY to log in to the server as the root user.
- Go to the installation directory and decompress the installation package.
cd /path/to/RepeatModeler tar -xvf 2.0.1.tar.gz cd RepeatModeler-2.0.1
- Compile the file.
perl ./configure
If the system displays a message indicating that a module is missing, run cpan -i * to install the module (* indicates the module name). For example:
cpan -i JSON cpan -i LWP::UserAgent
After all modules are installed, run the perl ./configure command again.
Press Enter.
Input /usr/bin/perl to use the built-in Perl of the system, and then press Enter.
Input /path/to/RepeatMasker/RepeatMasker and press Enter.
Input /path/to/RepeatMasker/RECON-1.08/src and press Enter.
Input /path/to/RepeatScout/RepeatScout_install and press Enter.
Input /path/to/RepeatMasker/TRF_install/bin/trf and press Enter.
Input 1 and press Enter to use RMBlast.
Input /path/to/rmblast/rmblast_install/bin and press Enter.
After RMBlast is configured, input 3 and press Enter.
Input n and press Enter.
The installation is successful, and the message "Congratulations! RepeatModeler is now ready to use" is displayed.
