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Compiling and Installing SnpEff

Procedure

  1. Use PuTTY to log in to the server as the root user.
  2. Run the following command to install the Java environment:
    yum install java-1.8.0-openjdk-devel.aarch64 -y
  3. Run the following command to switch to the SnpEff directory:
    cd /path/to/SNPEFF
  4. Run the following command to decompress the installation package:
    unzip snpEff_v4_3_core.zip
  5. Run the following command to copy the GRCh37.75 file:
    cp snpEff_v4_3_GRCh37.75.zip /path/to/SNPEFF/snpEff
  6. Run the following command to switch to the SnpEff directory:
    cd /path/to/SNPEFF/snpEff
  7. Run the following command to decompress the installation package:
    unzip snpEff_v4_3_GRCh37.75.zip