Compiling and Installing SnpEff
Procedure
- Use PuTTY to log in to the server as the root user.
- Run the following command to install the Java environment:
yum install java-1.8.0-openjdk-devel.aarch64 -y
- Run the following command to switch to the SnpEff directory:
cd /path/to/SNPEFF
- Run the following command to decompress the installation package:
unzip snpEff_v4_3_core.zip
- Run the following command to copy the GRCh37.75 file:
cp snpEff_v4_3_GRCh37.75.zip /path/to/SNPEFF/snpEff
- Run the following command to switch to the SnpEff directory:
cd /path/to/SNPEFF/snpEff
- Run the following command to decompress the installation package:
unzip snpEff_v4_3_GRCh37.75.zip
Parent topic: SnpEff V4_3 Porting Guide (CentOS 7.6)