Compilation and Installation

Procedure

1. Use PuTTY to log in to the server as the root user.
2. Decompress the installation package.

   cd /path/to/snphylo
   tar xvf 20180901.tar.gz
   cd SNPhylo-20180901

3. Modify the configuration file.
   1. Open snphylo.cfg.

      vim snphylo.cfg

   2. Press i to enter the insert mode and modify the file as follows:

      

   3. Press Esc, type :wq!, and press Enter to save the file and exit.
4. Run the installation script.

   sh setup.sh

   Type y as prompted. If the system displays a message indicating that Muscle and dnaml are not found, type the paths of the Muscle and dnaml executable files.

   If the following information is displayed, the installation is successful: