Installing Samtools

Procedure

1. Use PuTTY to log in to the server as the root user.
2. Use an SFTP tool to upload the Samtools installation package to the /path/to/SAMTOOLS directory on the server.
3. Run the following command to decompress the installation package:

   cd /path/to/SAMTOOLS && tar -zxf samtools-1.11.tar.gz

4. Run the following command to go to the installation directory:

   cd samtools-1.11

5. Run the following commands to perform the configuration:

   autoheader
   autoconf
   sed -i 's/\-O2/\-O3 -march=armv8.2-a -mtune=tsv110/g' `grep -lr "\-O2" ./`
   CC=`which gcc` ./configure --prefix=/path/to/SAMTOOLS --with-htslib=/path/to/HTSLIB

6. Run the following commands to perform the compilation and installation:

   make -j 16
   make install