Obtaining the Source Code

Procedure

1. Download the installation packages of Trinity, Inchworm, Chrysalis, seqtk-trinity, bamsifter, and HTSlib.

   Download Trinity at https://github.com/trinityrnaseq/trinityrnaseq/archive/v2.11.0.tar.gz

   Download Inchworm at https://github.com/trinityrnaseq/Inchworm/archive/master.zip

   Download Chrysalis at https://github.com/trinityrnaseq/Chrysalis/archive/8ef13ed1fa618186ec3dc04522115c99fdfacda2.zip

   Download seqtk-trinity at https://github.com/trinityrnaseq/seqtk-trinity/archive/f5e229dc164823c3ef14e8b8e2ba7d84c8d80e6c.zip

   Download bamsifter at https://github.com/trinityrnaseq/bamsifter/archive/f034f247d5fa1fd9847c390d99bfd918da7d7739.zip

   Download HTSlib at https://github.com/samtools/htslib/archive/1.11.zip

2. Use an SFTP tool to upload the installation packages of Trinity, Inchworm, and Chrysalis to the /path/to/TRINITY directory.