Paths for Software Porting

This chapter lists the software installation paths involved in the VarScan software porting.

**Table 1** Paths for software porting
No.	Software Installation Path	Description	Remarks
1	-	Installation path of each software package required for setting up the basic environment.	See "Paths for Software Porting" in Basic Environment Setup Guide.
2	/path/to/SAMTOOLS	Installation path of Samtools.	The installation paths listed in this table are only examples. Shared paths are recommended. Replace the paths used in commands in this document with the actual paths planned during the installation process.
3	/path/to/VARSCAN	Installation path of VarScan.

Parent topic: VarScan 2.4.2 Porting Guide (CentOS 7.6)