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Installing HDF5

Procedure

  1. Use PuTTY to log in to the server as the root user.
  2. Run the following commands to decompress the HDF5 installation package:
    tar -xvf hdf5-1.10.1.tar.gz
  3. Run the following command to switch to the directory containing the decompressed files:
    cd hdf5-1.10.1
  4. Run the following command perform configuration:
    ./configure --prefix=/path/to/HDF5  --build=aarch64-unknown-linux-gnu --enable-fortran --enable-static=yes --enable-parallel --enable-shared
  5. Run the following commands to perform compilation and installation:
    make -j 20
    make install
  6. Run the following commands to load environment variables:
    export MPICC=mpicc
    export MPICXX=mpicxx
    export MPIFC=mpifort
    export CC=$MPICC
    export CXX=$MPICXX
    export FC=$MPIFC
    export F77=$MPIFC
    export LD_LIBRARY_PATH=/path/to/HDF5/lib:$LD_LIBRARY_PATH