Running and Verification

Procedure

1. Use PuTTY to log in to the server as the root user.
2. Go to the directory.

   cd /path/to/CASE

3. Download the test cases.

   wget http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase3/data/HG00100/alignment/HG00100.chrom20.ILLUMINA.bwa.GBR.low_coverage.20130415.bam

4. Perform a test.

   time sambamba-0.8.2 sort HG00100.chrom20.ILLUMINA.bwa.GBR.low_coverage.20130415.bam

   Check the real value (unit: s). A smaller value indicates higher performance.