Installing HDF5

Procedure

1. Use PuTTY to log in to the server as the root user.
2. Decompress the HDF5 installation package.

   tar -xvf hdf5-1.10.5.tar.gz

3. Go to the directory generated after the decompression.

   cd hdf5-1.10.5

4. Perform the configuration.

   CC=mpicc CXX=mpicxx FC=mpifort F77=mpif77 CFLAGS="-fPIC -DPIC" FCFLAGS="-fPIC -DPIC" FFLAGS="-fPIC" \./configure --prefix=/path/to/SMOKE/HDF5 --enable-shared --enable-fortran --enable-static --enable-parallel

5. Modify the libtool file in the current folder.
   1. Open the libtool file.

      vi libtool

   2. Press i to enter the edit mode and modify line 11835 in the libtool file.

      wl='-Wl,'

      

      After performing 5.a, press Esc, type :set nu, and press Enter to display the line number.

   3. Press Esc, type :wq!, and press Enter to save the file and exit.
6. Perform the compilation and installation.

   make
   make install

7. Set the HDF5 environment variables.

   export LD_LIBRARY_PATH=/path/to/HDF5/lib:$LD_LIBRARY_PATH
   export HDF5=/path/to/HDF5