Compiling and Installing LDBlockShow

Procedure

1. Use PuTTY to log in to the server as the root user.
2. Run the following command to install the base dependency:

   yum install zlib perl-ExtUtils-CBuilder perl-ExtUtils-MakeMaker

3. Run the following commands to configure the compilers:

   export CC=`which gcc`
   export CXX=`which g++`
   export FC=`which gfortran`

4. Run the following commands to install SVG:

   tar -xzf SVG-2.85.tar.gz
   cd SVG-2.85
   perl Makefile.PL
   make
   make install

5. Run the following commands to install LDBlockShow:

   tar -zxvf v1.36.tar.gz
   cd LDBlockShow-1.36
   chmod +x configure
   ./configure
   make
   cp LDBlockShow ./bin/
   cp: overwrite './bin/LDBlockShow'? y

6. Run the following commands to install PLINK:

   yum install blas-devel lapack-devel atlas-devel perl-Digest-SHA -y
   ln -s /usr/lib64/atlas/libtatlas.so.3.10 /usr/lib64/atlas/libatlas.so
   ln -s /usr/lib64/atlas/libsatlas.so.3.10 /usr/lib64/atlas/libcblas.so
   tar -zxf master.tar.gz
   mv zlib-1.2.11.tar.gz plink-ng-master
   cd plink-ng-master/1.9 && sed -i '0,/curl/s/curl/# curl/g' plink_first_compile
   ./plink_first_compile
   cp plink /path/to/LDBLOCKSHOW/LDBlockShow-1.36/bin/
   cp: overwrite '/path/to/LDBLOCKSHOW/LDBlockShow-1.36/bin/plink'? y