Running and Verification

Procedure

1. Use PuTTY to log in to the server as the root user.
2. Go to the test directory.

   cd pyclone-0.13.1/examples/mixing/tsv/

3. Perform the test.

   PyClone run_analysis_pipeline --in_files SRR385938.tsv SRR385939.tsv SRR385940.tsv SRR385941.tsv --working_dir pyclone_analysis

   Information similar to the following is displayed:

   

   Check whether the pyclone_analysis directory contains four subdirectories and the config.yaml file.