Paths for Software Porting

This chapter lists the software installation paths involved in the TopHat2 software porting.

**Table 1** Paths for software porting
No.	Software Installation Path	Description	Remarks
1	-	Installation path of each software package required for setting up the basic environment	See "Paths for Software Porting" in Basic Environment Setup Guide.
2	/path/to/BOWTIE2	Installation path of Bowtie2	The installation paths provided here are only examples. Shared paths are recommended. Replace the paths used in commands in this document with the actual paths planned during the installation process.
3	/path/to/BOOST	Installation path of Boost
4	/path/to/CASE	Path for storing the test case
5	/path/to/TOPHAT2	Installation path of TopHat2

Parent topic: TopHat2 2.1.1 Porting Guide (CentOS 7.6)