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Paths for Software Porting

This chapter lists the software installation paths involved in the CNVnator software porting.

Table 1 Paths for software porting

No.

Software Installation Path

Description

Remarks

1

-

Installation path of each software package required for setting up the basic environment

See "Paths for Software Porting" in Basic Environment Setup Guide.

2

/path/to/CMAKE

Installation path of CMake

The installation paths provided here are only examples. Shared paths are recommended. Replace the paths used in commands in this document with the actual paths planned during the installation process.

3

/path/to/SAMTOOLS

Installation path of Samtools

4

/path/to/SOURCE

Installation path of the ROOT tool package

5

/path/to/CNVNATOR

Installation path of CNVnator

6

/path/to/CASE

Path for storing the CNVnator test cases