Paths for Software Porting

This chapter lists the software installation paths involved in the CNVnator software porting.

**Table 1** Paths for software porting
No.	Software Installation Path	Description	Remarks
1	-	Installation path of each software package required for setting up the basic environment	See "Paths for Software Porting" in Basic Environment Setup Guide.
2	/path/to/CMAKE	Installation path of CMake	The installation paths provided here are only examples. Shared paths are recommended. Replace the paths used in commands in this document with the actual paths planned during the installation process.
3	/path/to/SAMTOOLS	Installation path of Samtools
4	/path/to/SOURCE	Installation path of the ROOT tool package
5	/path/to/CNVNATOR	Installation path of CNVnator
6	/path/to/CASE	Path for storing the CNVnator test cases

Parent topic: CNVnator 0.4.1 Porting Guide (CentOS 7.6)