Planning the Paths for Software Porting

This section describes the software installation paths involved in the AUGUSTUS software porting.

**Table 1** Paths for software porting
No.	Software Installation Path	Description	Remarks
1	-	Installation path of each software package required for setting up the basic environment.	For details, see "Planning Data for Installation" in the HPC Solution Basic Environment Setup Guide.
2	/path/to/AUGUSTUS/htslib	Installation path of HTSlib.	The installation paths listed in this table are only for reference. Shared paths are recommended. Replace the paths used in commands in this document with the actual paths planned during the installation process.
3	/path/to/AUGUSTUS/bcftools	Installation path of BCFtools.
4	/path/to/AUGUSTUS/samtools	Installation path of SAMtools.
5	/path/to/AUGUSTUS/cmake	Installation path of CMake.
6	/path/to/AUGUSTUS/bamtools	Installation path of Bamtools.
7	/path/to/AUGUSTUS/augustus	Installation path of AUGUSTUS.
8	/path/to/AUGUSTUS/CASE	Path for storing cases.

Parent topic: Augustus 3.3.3 Porting Guide (CentOS 7.6)