Compilation and Installation

Procedure

1. Use PuTTY to log in to the server as the root user.
2. Install the dependencies.

   R
   install.packages("BiocManager")

   Information similar to the following is displayed:

   

3. Install the dependencies for bioconductor-manta.

   BiocManager::install("edgeR")
   BiocManager::install("Hmisc")
   BiocManager::install("caroline")
   q()

4. Install bioconductor-manta.

   cd /path/to/bioconductor-manta
   R CMD INSTALL manta_1.32.0.tar.gz

   Information similar to the following is displayed: