Installing GeneMark

Procedure

1. Use PuTTY to log in to the server as the root user.
2. Install ExaGear for Server. For details, see "Installing ExaGear for Server on CentOS " in Binary Translator (ExaGear) User Guide.
3. Install the dependencies.

   yum install perl-CPAN
   cpan -i YAML
   cpan -i Hash::Merge
   cpan -i Logger::Simple
   cpan -i Parallel:ForkManager
   cpan -i MCE::Mutex

4. Download the installation package.

   http://exon.gatech.edu/GeneMark/license_download.cgi

   

   You need to submit an application before downloading the software. Download both the software and license file.

   1. Fill in the application form.

      

   2. Download the software.

      

   3. Download the license key.

      

5. Install the software.
   1. Go to the installation package directory.

      cd /path/to/GeneMark

   2. Decompress the installation package.

      tar xvf gmes_linux_64_4.tar.gz

   3. Decompress the license file.

      gunzip gm_key_64

   4. Configure the license.

      cd gmes_linux_64_4
      mv ../gmes_linux_64_4 ./.gm_key

   5. Set the environment variable.

      export PATH=/path/to/GeneMark/gmes_linux_64_4:$PATH